N.I.M.R.O.D.  
Functions/Subroutines

parametricEmpiricalBayes.f90 File Reference

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Functions/Subroutines

subroutine writeFile_bayes ()
 Write output file for PEB individual parameters and trajectories.
subroutine EBCurves (b)
 PEB individual trajectories computation.
subroutine EmpiricalBayesEstimation (b)
 PEB individual parameters computation.

Function Documentation

subroutine EBCurves ( double precision,dimension(npm),intent(in)  b)

PEB individual trajectories computation.

AUTHOR : Melanie Prague Daniel Commenges Julia Drylewicz Jeremy guedj Rodolphe Thiebaut

DESCRIPTION :

Compute trajectories with individual parameters computed thanks to PEB.

CAUTION : Normally, these subroutines must not be modified in routine by users.

MODIFICATION:

01/09/2012 - Prague - Refactoring

INFORMATIONS:

Definition at line 82 of file parametricEmpiricalBayes.f90.

References WorkingSharedValues::b1, WorkingSharedValues::bayes_data, WorkingSharedValues::emp_bayes, WorkingSharedValues::ICmoins, WorkingSharedValues::ICplus, WorkingSharedValues::numpat1, ODEschedule(), removeObservationModel(), solution(), and WorkingSharedValues::systeme.

Referenced by nimrod().

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subroutine EmpiricalBayesEstimation ( double precision,dimension(npm),intent(in)  b)

PEB individual parameters computation.

AUTHOR : Melanie Prague Daniel Commenges Julia Drylewicz Jeremy guedj Rodolphe Thiebaut

DESCRIPTION :

Compute individual parameters with PEB. See Kass et al. 1996 (Approximate Bayesian inference in conditionally independent hierarchical models (parametric empirical Bayes models), Journal of the American Statistical Association)

CAUTION : Normally, these subroutines must not be modified in routine by users.

MODIFICATION:

01/09/2012 - Prague - Refactoring

INFORMATIONS:

Parameters:
[in]bParameters for PEB

Definition at line 155 of file parametricEmpiricalBayes.f90.

References WorkingSharedValues::abserrfuncpa, WorkingSharedValues::emp_bayes, and WorkingSharedValues::startsauv.

Referenced by nimrod().

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subroutine writeFile_bayes ( )

Write output file for PEB individual parameters and trajectories.

AUTHOR : Melanie Prague Daniel Commenges Julia Drylewicz Jeremy guedj Rodolphe Thiebaut

DESCRIPTION :

Write in a file for each time of observation : identifier, time and biomarkers

CAUTION : Normally, these subroutines must not be modified in routine by users.

MODIFICATION:

01/09/2012 - Prague - Refactoring

INFORMATIONS:

Definition at line 28 of file parametricEmpiricalBayes.f90.

References WorkingSharedValues::bayes_data, WorkingSharedValues::emp_bayes, WorkingSharedValues::ICmoins, WorkingSharedValues::ICplus, mpimod::numproc, and WorkingSharedValues::OutputFolder.

Referenced by nimrod().

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