N.I.M.R.O.D.  
Functions/Subroutines

inAndOutInternal.f90 File Reference

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Functions/Subroutines

subroutine OutputFileCreation (b, v, ni, istop, conv, Vrais, VraisNP, LCV_a, tpscpu)
 Output file in Latex.
subroutine InputReading ()
 Input file reading.
subroutine TraceR (b)
 R code is provided in .
subroutine CreateRelanceFile (b)
 Output file to restart easily the program.

Function Documentation

subroutine CreateRelanceFile ( double precision,dimension(npm),intent(in)  b)

Output file to restart easily the program.

AUTHOR : Melanie Prague Daniel Commenges Julia Drylewicz Jeremy guedj Rodolphe Thiebaut

DESCRIPTION :

Create the file Input.txt with output values of parameters to restart the algorithm if necessary.

CAUTION : Normally, these subroutines must not be modified in routine by users.

MODIFICATION:

01/01/2013 - Prague - Creation

INFORMATIONS:

Definition at line 369 of file inAndOutInternal.f90.

References WorkingSharedValues::controleCA, WorkingSharedValues::controleCB, WorkingSharedValues::controleRDM, WorkingSharedValues::esp_prior, WorkingSharedValues::estimationWanted, WorkingSharedValues::marqONLY, WorkingSharedValues::maxiteration, WorkingSharedValues::nomparams, WorkingSharedValues::OutputFolder, WorkingSharedValues::penalisationAll, WorkingSharedValues::penalisationBiologique, WorkingSharedValues::std_prior, and WorkingSharedValues::SwitchMarquartd.

Referenced by nimrod().

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subroutine InputReading ( )

Input file reading.

AUTHOR : Melanie Prague Daniel Commenges Julia Drylewicz Jeremy guedj Rodolphe Thiebaut

DESCRIPTION :

Read a standardized input file to specify what the program must compute.

CAUTION : Normally, these subroutines must not be modified in routine by users.

MODIFICATION:

01/09/2012 - Prague - Refactoring

INFORMATIONS:

Definition at line 181 of file inAndOutInternal.f90.

References WorkingSharedValues::binit, WorkingSharedValues::controleCA, WorkingSharedValues::controleCB, WorkingSharedValues::controleRDM, WorkingSharedValues::esp_prior, WorkingSharedValues::estimationWanted, WorkingSharedValues::marqONLY, WorkingSharedValues::maxiteration, WorkingSharedValues::nomparams, mpimod::numproc, WorkingSharedValues::OutputFolder, WorkingSharedValues::penalisationAll, WorkingSharedValues::penalisationBiologique, WorkingSharedValues::std_prior, and WorkingSharedValues::SwitchMarquartd.

Referenced by nimrod().

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subroutine OutputFileCreation ( double precision,dimension(npm),intent(in)  b,
double precision,dimension(npm*(npm+3)/2),intent(in)  V,
integer,intent(in)  ni,
integer,intent(in)  istop,
double precision,dimension(3),intent(in)  conv,
double precision,intent(in)  Vrais,
double precision,intent(in)  VraisNP,
double precision,intent(in)  LCV_a,
double precision,intent(in)  tpscpu 
)

Output file in Latex.

AUTHOR : Melanie Prague Daniel Commenges Julia Drylewicz Jeremy guedj Rodolphe Thiebaut

DESCRIPTION :

Produce a standardized output file in Latex shape.

CAUTION : Normally, these subroutines must not be modified in routine by users.

MODIFICATION:

01/09/2012 - Prague - Refactoring

INFORMATIONS:

Parameters:
[in]bParameters values after NIMROD optimization
[in]vhessian after NIMROD optimization
[in]niNumber of iteration after NIMROD optimization
[in]istopConvergence status after NIMROD optimization
[in]convConvergence criteria values after NIMROD optimization
[in]VraisPenalized likelihood after NIMROD optimization
[in]VraisNPUnpenalized likelihood after NIMROD optimization
[in]LCV_aQuality of model assessment after NIMROD optimization
[in]tpscpuTime to do NIMROD optimization

Definition at line 36 of file inAndOutInternal.f90.

References WorkingSharedValues::binit, WorkingSharedValues::esp_prior, WorkingSharedValues::LLnonPenalisee, WorkingSharedValues::LLPenalisee, mpimod::nbprocs, WorkingSharedValues::nomparams, mpimod::numproc, WorkingSharedValues::OutputFolder, and WorkingSharedValues::std_prior.

Referenced by nimrod().

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subroutine TraceR ( double precision,dimension(npm),intent(in)  b)

R code is provided in .

/folderOutput/graphics/programR.txt.

AUTHOR : Melanie Prague Daniel Commenges Julia Drylewicz Jeremy guedj Rodolphe Thiebaut

DESCRIPTION :

Creation fo data fit plots for each considered patient and biomarkers.

CAUTION : Normally, these subroutines must not be modified in routine by users.

MODIFICATION:

01/01/2013 - Prague - Creation

INFORMATIONS:

Definition at line 287 of file inAndOutInternal.f90.

References WorkingSharedValues::OutputFolder.

Referenced by nimrod().

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